PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G080900.1
Common NameB456_009G080900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 130aa    MW: 15288.7 Da    PI: 4.841
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G080900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-071359246
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        + W+t E +l+ +a+  ++ +   +W +Ia ++  g+++k++ +++ +
  Gorai.009G080900.1 13 NEWSTLENKLFEHAFLVFPEEtsyRWQKIADRIS-GKSAKEVEEHFDM 59
                        68*****************99*************.**********966 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-41163IPR001005SANT/Myb domain
PfamPF002493.7E-61360IPR001005SANT/Myb domain
SuperFamilySSF466896.95E-101368IPR009057Homeodomain-like
CDDcd001677.63E-41461No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNPQNQNNNN LTNEWSTLEN KLFEHAFLVF PEETSYRWQK IADRISGKSA KEVEEHFDML  60
LHDVYEIEAG RIEIPRYADD SSMLLSNWNS NNQIYFTSKS KHQLDNERKE GSPWTEEEHN  120
KYTAHLNSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442385.11e-84PREDICTED: protein RADIALIS-like 4 isoform X1
TrEMBLA0A0D2QBQ62e-92A0A0D2QBQ6_G
STRINGGLYMA20G24600.13e-38(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2450834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.15e-25MYB family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]